| Rank | City | 2000 Population |
|---|---|---|
| 1 | King Cove | 788 |
| 2 | Point Hope | 755 |
| 3 | Akutan | 712 |
| 4 | Kake | 709 |
| 5 | Galena | 673 |
| 6 | Aniak | 573 |
| 7 | Angoon | 567 |
| 8 | Thorne Bay | 555 |
| 9 | Pilot Station | 551 |
| 10 | St. Paul | 523 |
| 11 | Nuiqsut | 431 |
| 12 | Gustavus | 426 |
| 13 | Kivalina | 378 |
| 14 | Anderson | 367 |
| 15 | Elim | 312 |
| 16 | Tanana | 307 |
| 17 | Kaktovik | 292 |
| 18 | Holy Cross | 226 |
| 19 | Ouzinkie | 225 |
| 20 | Nondalton | 219 |
| 21 | Nightmute | 208 |
| 22 | Coffman Cove | 198 |
| 23 | Ruby | 188 |
| 24 | Pelican | 162 |
| 25 | St. George | 149 |
| 26 | Diomede | 146 |
| 27 | Deering | 136 |
| 28 | Ekwok | 130 |
| 29 | Shageluk | 129 |
| 30 | Eagle | 129 |
| 31 | Port Alexander | 81 |
| 32 | Akhiok | 80 |
| 33 | False Pass | 63 |
| 34 | Bettles | 43 |
| 35 | Kodiak | 6,375 |
| 36 | Homer | 4,847 |
| 37 | Barrow | 4,570 |
| 38 | Unalaska | 4,272 |
| 39 | Petersburg | 3,225 |
| 40 | Cordova | 2,456 |
| 41 | Hoonah | 855 |
| 42 | Klawock | 852 |
| 43 | Togiak | 809 |
| 44 | Selawik | 773 |
| 45 | Emmonak | 768 |
| 46 | Mountain Village | 756 |
| 47 | Unalakleet | 745 |
| 48 | Kwethluk | 714 |
| 49 | Craig | 1,386 |
| 50 | Houston | 1,211 |
| 51 | Kasaan | 39 |
| 52 | Kupreanof | 23 |
| 53 | Alakanuk | 653 |
| 54 | Gambell | 647 |
| 55 | Savoonga | 641 |
| 56 | Noorvik | 635 |
| 57 | Fort Yukon | 593 |
| 58 | Kotlik | 592 |
| 59 | Shishmaref | 560 |
| 60 | Quinhagak | 556 |
| 61 | Stebbins | 545 |
| 62 | Wainwright | 544 |
| 63 | Toksook Bay | 533 |
| 64 | St. Mary's | 501 |
| 65 | New Stuyahok | 471 |
| 66 | Nunapitchuk | 467 |
| 67 | Scammon Bay | 466 |
| 68 | Kachemak | 430 |
| 69 | Manokotak | 399 |
| 70 | Buckland | 407 |
| 71 | Nenana | 401 |
| 72 | McGrath | 400 |
| 73 | Saxman | 399 |
| 74 | Chefornak | 395 |
| 75 | Napaskiak | 391 |
| 76 | Kiana | 389 |
| 77 | Hydaburg | 381 |
| 78 | St. Michael | 367 |
| 79 | Napakiak | 353 |
| 80 | Marshall | 350 |
| 81 | Akiak | 309 |
| 82 | Brevig Mission | 275 |
| 83 | Nulato | 335 |
| 84 | Adak | 311 |
| 85 | Ambler | 309 |
| 86 | Russian Mission | 297 |
| 87 | Koyuk | 296 |
| 88 | Huslia | 292 |
| 89 | Seldovia | 286 |
| 90 | Anaktuvuk Pass | 281 |
| 91 | Eek | 280 |
| 92 | Lower Kalskag | 267 |
| 93 | Shungnak | 256 |
| 94 | Teller | 267 |
| 95 | Port Lions | 256 |
| 96 | Old Harbor | 237 |
| 97 | Goodnews Bay | 230 |
| 98 | Upper Kalskag | 230 |
| 99 | Shaktoolik | 229 |
| 100 | Kaltag | 229 |
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