| Rank | City | 2000 Population |
|---|---|---|
| 1 | Elkhart Lake | 1,025 |
| 2 | Roberts | 1,016 |
| 3 | Cashton | 1,007 |
| 4 | Benton | 975 |
| 5 | Rosendale | 945 |
| 6 | Brooklyn | 921 |
| 7 | Dorchester | 829 |
| 8 | Dresser | 731 |
| 9 | Almena | 736 |
| 10 | Blue Mounds | 710 |
| 11 | Eden | 696 |
| 12 | Ridgeway | 688 |
| 13 | Francis Creek | 680 |
| 14 | Boyd | 679 |
| 15 | Fremont | 657 |
| 16 | Stockbridge | 649 |
| 17 | Eleva | 637 |
| 18 | Gays Mills | 631 |
| 19 | Rockland | 627 |
| 20 | Bayfield | 612 |
| 21 | Suring | 605 |
| 22 | Camp Douglas | 590 |
| 23 | Merrillan | 585 |
| 24 | Stevens Point | 25,160 |
| 25 | Plum City | 578 |
| 26 | Wausaukee | 570 |
| 27 | Stetsonville | 564 |
| 28 | Vesper | 540 |
| 29 | Melrose | 530 |
| 30 | Wilton | 522 |
| 31 | Ettrick | 521 |
| 32 | Clayton | 506 |
| 33 | Arlington | 486 |
| 34 | Embarrass | 487 |
| 35 | Ontario | 475 |
| 36 | Gilman | 475 |
| 37 | Almond | 461 |
| 38 | Hancock | 461 |
| 39 | Neshkoro | 454 |
| 40 | Hixton | 446 |
| 41 | Lac La Belle | 429 |
| 42 | Rock Springs | 424 |
| 43 | Merrimac | 419 |
| 44 | Nelson | 395 |
| 45 | Readstown | 394 |
| 46 | De Soto | 393 |
| 47 | Glenbeulah | 379 |
| 48 | Kellnersville | 373 |
| 49 | Ephraim | 353 |
| 50 | Weyerhaeuser | 353 |
| 51 | Scandinavia | 351 |
| 52 | Fairwater | 350 |
| 53 | South Milwaukee | 21,202 |
| 54 | Winter | 344 |
| 55 | Arpin | 337 |
| 56 | Doylestown | 328 |
| 57 | Hawkins | 317 |
| 58 | Oakdale | 299 |
| 59 | Kingston | 287 |
| 60 | Haugen | 287 |
| 61 | North Bay | 259 |
| 62 | Egg Harbor | 254 |
| 63 | Ogdensburg | 224 |
| 64 | Nelsonville | 192 |
| 65 | Elderon | 188 |
| 66 | Lime Ridge | 168 |
| 67 | Patch Grove | 163 |
| 68 | Catawba | 148 |
| 69 | Conrath | 103 |
| 70 | Big Falls | 85 |
| 71 | Allouez | 15,445 |
| 72 | Onalaska | 14,911 |
| 73 | Menomonie | 14,977 |
| 74 | Shorewood | 13,686 |
| 75 | Oconomowoc | 12,586 |
| 76 | Cedarburg | 11,165 |
| 77 | Merrill | 10,154 |
| 78 | Burlington | 9,995 |
| 79 | Sturgeon Bay | 9,469 |
| 80 | Rhinelander | 8,072 |
| 81 | Altoona | 6,703 |
| 82 | Elm Grove | 6,258 |
| 83 | Waupaca | 5,722 |
| 84 | Oshkosh | 63,378 |
| 85 | Bayside | 4,512 |
| 86 | Viroqua | 4,414 |
| 87 | Medford | 4,404 |
| 88 | Mosinee | 4,079 |
| 89 | Pulaski | 3,103 |
| 90 | Cross Plains | 3,095 |
| 91 | Paddock Lake | 3,035 |
| 92 | Amery | 2,839 |
| 93 | Sheboygan | 50,751 |
| 94 | Wisconsin Dells | 2,494 |
| 95 | Winneconne | 2,398 |
| 96 | Cumberland | 2,317 |
| 97 | Washburn | 2,279 |
| 98 | Siren | 982 |
| 99 | Mount Calvary | 955 |
| 100 | Buffalo City | 1,043 |
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